Genomics secondary analysis using AWS step functions and AWS Batch
This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch. It deploys AWS services to develop and run custom workflow pipelines, monitor pipeline status and performance, fail-over to on-demand, handle errors, optimize for cost, and secure data with least-privileges.
The solution is designed to be starting point for developing your own custom genomics workflow pipelines using Amazon States Language and AWS Step Functions using continuous integration / continuous deployment (CI/CD) principles. That is everything - from the workflow definitions, to the resources they need to run on top of - is code, tracked in version control, and automatically built, tested, and deployed when developers make changes.