Anomaly detection for graph-based data

Diffusion modeling within the representational space of a variational autoencoder enables state-of-the-art results.

Anomaly detection is the identification of data that diverges significantly from established norms, which can indicate harmful activity. It’s a particularly tough challenge in the case of graph-based data, where anomaly detection is based not only on data values but on topological relationships within the graph. Because anomalies tend to be rare, it can be hard to find enough examples to train a machine learning model on the complexities of anomaly detection in graphs.

In a paper we presented last week at the International Conference on Web Search and Data Mining (WSDM), we describe a new method for synthesizing training data for graph-based anomaly detectors. Our method combines a variational graph autoencoder, which learns a probability distribution that can be used to generate random samples, with diffusion modeling, which learns to convert random noise into intelligible outputs.

In tests, we compared anomaly detectors trained with synthetic data generated through our method with detectors trained using five previous approaches to data augmentation. We compared the models on five datasets, using three different metrics, for a total of 15 experiments. In 13 of those experiments, our model came out on top; different models were the top performers on the other two.

Graph-based modeling

Graphs are the natural way to represent data movement through networks, whether they’re computer networks, communication networks, or networks of interactions, as between buyers and sellers on an e-commerce site. Anomaly detection in graphs can thus help detect server attacks, spam, fraud, and other types of abuse.

Related content
Slice-level detection of robots (SLIDR) uses deep-learning and optimization techniques to ensure that advertisers aren’t charged for robotic or fraudulent ad clicks.

In recent years, graph analysis has, like most fields, benefited from deep learning. Graph neural networks build up graph representations iteratively: first, they embed the data corresponding to nodes in the graph; then they produce embeddings that combine node embeddings with those of adjacent nodes; then they produce embeddings that combine those higher-level embeddings; and so on, until some fixed termination point. Ultimately, the model produces embeddings that capture information about whole neighborhoods of the graph. (In our experiments, we decided on four-hop neighborhoods.)

The complexity of graphs — the need to represent data both topologically and quantitatively — means that models for analyzing them need extra training data, which can be scarce in the wild. Hence the need for synthetic training data.

Latent-space diffusion

At its core, our data synthesis model is a variational graph autoencoder. “Autoencoder” means that it’s trained to output the same data it receives as input. In-between the input and output layers, however, is a bottleneck layer that forces the network to learn a compressed representation of the input.

“Variational” means that the model’s training objective encourages it not only to faithfully reproduce inputs but also to learn compressed representations whose distribution adheres to some prespecified shape, such as a Gaussian distribution. This means that, during the data synthesis phase, random samples from that distribution are likely to result in realistic-looking data.

The autoencoder’s compressed representations define a representational space, and it’s within that space that we apply diffusion modeling. The autoencoder produces an embedding of the input graph, and our model iteratively adds noise to it. A denoiser then performs the same process in reverse, iteratively denoising the embedding.

At left is a beige rectangle labeled "Graph space" and at right a larger blue rectangle labeled "Latent space". In the top row of the graph space, an input graph passes to a GNN encoder, whose output, z0, is in the latent space. Z0 goes through a diffusion process to become ZT, at the right edge of the top row. At the right edge of the bottom row, ZT passes leftward, to an MLP, to become Z-tilde-t-minus-1, which is iteratively denoised (T-1 times) to produce z-tilde-0, at the left edge of the latent space. Z-tilde-0 passes to an MLP decoder in the second row of the graph space, which generates a new graph from it.
Our approach applies diffusion modeling within the representational space (latent space) defined by the graph encoder. Noise is added to the input embedding (z0) in T discrete steps; the embedding is then denoised in another T steps.

 This is, effectively, a second check to ensure that the synthetic data looks like real data. If the distribution learned by the autoencoder doesn’t completely capture the characteristics of anomalous data, the addition of noise can “blur out” the mischaracterized features. The denoising step then fills in the blurred-out features with features more consistent with the training data.

Data synthesis

Our approach has a couple other wrinkles designed to improve the quality of the synthesized data. One is that, after the diffusion process, the reconstituted graph embedding passes to not one but several decoders, each specialized for a different aspect of the graph.

At minimum, there are two decoders, one for node features and one for graph structure. If the graphs in question include time series data, we use a third decoder to assign time stamps to nodes.

Related content
In the field of knowledge discovery, says Amazon Scholar Christos Faloutsos, “We want to choose the right tool for the given application.”

Another wrinkle is that, during training, we label graph nodes as either anomalous or normal, then train on both positive and negative examples. This helps the model learn the distinction between the two. But it also means that the model learns a distribution that’s conditioned on class labels, so that during synthesis, we can steer it toward samples that will result in graphs that contain anomalies.

Finally, it was important that our model be able to generate heterogeneous graphs — that is, graphs with different node and edge types. In an e-commerce setting, for instance, nodes might represent buyers, sellers, and product pages, while edges might represent purchases, product views, reviews, and the like.

Consequently, as the encoder in our autoencoder, we use a heterogeneous-graph transformer, a module that has several modifications to enable it to handle heterogeneous graphs, including separate attention mechanisms for different node or edge types.

Taken together, these features of our model enable it to outperform its predecessors, and in the paper, we report an ablation study showing that each of these features contributes significantly to our model’s success.

Research areas

Related content

US, MA, N.reading
Amazon Industrial Robotics Group is seeking exceptional talent to help develop the next generation of advanced robotics systems that will transform automation at Amazon's scale. We're building revolutionary robotic systems that combine cutting-edge AI, sophisticated control systems, and advanced mechanical design to create adaptable automation solutions capable of working safely alongside humans in dynamic environments. This is a unique opportunity to shape the future of robotics and automation at an unprecedented scale, working with world-class teams pushing the boundaries of what's possible in robotic dexterous manipulation, locomotion, and human-robot interaction. This role presents an opportunity to shape the future of robotics through innovative applications of deep learning and large language models. At Amazon Industrial Robotics Group, we leverage advanced robotics, machine learning, and artificial intelligence to solve complex operational challenges at an unprecedented scale. Our fleet of robots operates across hundreds of facilities worldwide, working in sophisticated coordination to fulfill our mission of customer excellence. We are pioneering the development of dexterous manipulation system that: - Enables unprecedented generalization across diverse tasks - Enables contact-rich manipulation in different environments - Seamlessly integrates low-level skills and high-level behaviors - Leverage mechanical intelligence, multi-modal sensor feedback and advanced control techniques. The ideal candidate will contribute to research that bridges the gap between theoretical advancement and practical implementation in robotics. You will be part of a team that's revolutionizing how robots learn, adapt, and interact with their environment. Join us in building the next generation of intelligent robotics systems that will transform the future of automation and human-robot collaboration. A day in the life - Work on design and implementation of methods for Visual SLAM, navigation and spatial reasoning - Leverage simulation and real-world data collection to create large datasets for model development - Develop a hierarchical system that combines low-level control with high-level planning - Collaborate effectively with multi-disciplinary teams to co-design hardware and algorithms for dexterous manipulation
US, NY, New York
We are seeking an Applied Scientist to lead the development of evaluation frameworks and data collection protocols for robotic capabilities. In this role, you will focus on designing how we measure, stress-test, and improve robot behavior across a wide range of real-world tasks. Your work will play a critical role in shaping how policies are validated and how high-quality datasets are generated to accelerate system performance. You will operate at the intersection of robotics, machine learning, and human-in-the-loop systems, building the infrastructure and methodologies that connect teleoperation, evaluation, and learning. This includes developing evaluation policies, defining task structures, and contributing to operator-facing interfaces that enable scalable and reliable data collection. The ideal candidate is highly experimental, systems-oriented, and comfortable working across software, robotics, and data pipelines, with a strong focus on turning ambiguous capability goals into measurable and actionable evaluation systems. Key job responsibilities - Design and implement evaluation frameworks to measure robot capabilities across structured tasks, edge cases, and real-world scenarios - Develop task definitions, success criteria, and benchmarking methodologies that enable consistent and reproducible evaluation of policies - Create and refine data collection protocols that generate high-quality, task-relevant datasets aligned with model development needs - Build and iterate on teleoperation workflows and operator interfaces to support efficient, reliable, and scalable data collection - Analyze evaluation results and collected data to identify performance gaps, failure modes, and opportunities for targeted data collection - Collaborate with engineering teams to integrate evaluation tooling, logging systems, and data pipelines into the broader robotics stack - Stay current with advances in robotics, evaluation methodologies, and human-in-the-loop learning to continuously improve internal approaches - Lead technical projects from conception through production deployment - Mentor junior scientists and engineers
US, WA, Seattle
Come be a part of a rapidly expanding $35 billion-dollar global business. At Amazon Business, a fast-growing startup passionate about building solutions, we set out every day to innovate and disrupt the status quo. We stand at the intersection of tech & retail in the B2B space developing innovative purchasing and procurement solutions to help businesses and organizations thrive. At Amazon Business, we strive to be the most recognized and preferred strategic partner for smart business buying. Bring your insight, imagination and a healthy disregard for the impossible. Join us in building and celebrating the value of Amazon Business to buyers and sellers of all sizes and industries. Unlock your career potential. Amazon Business Data Insights and Analytics team is looking for a Data Scientist to lead the research and thought leadership to drive our data and insights strategy for Amazon Business. This role is central in shaping the definition and execution of the long-term strategy for Amazon Business. You will be responsible for researching, experimenting and analyzing predictive and optimization models, designing and implementing advanced detection systems that analyze customer behavior at registration and throughout their journey. You will work on ambiguous and complex business and research science problems with large opportunities. You'll leverage diverse data signals including customer profiles, purchase patterns, and network associations to identify potential abuse and fraudulent activities. You are an analytical individual who is comfortable working with cross-functional teams and systems, working with state-of-the-art machine learning techniques and AWS services to build robust models that can effectively distinguish between legitimate business activities and suspicious behavior patterns You must be a self-starter and be able to learn on the go. Excellent written and verbal communication skills are required as you will work very closely with diverse teams. Key job responsibilities - Interact with business and software teams to understand their business requirements and operational processes - Frame business problems into scalable solutions - Adapt existing and invent new techniques for solutions - Gather data required for analysis and model building - Create and track accuracy and performance metrics - Prototype models by using high-level modeling languages such as R or in software languages such as Python. - Familiarity with transforming prototypes to production is preferred. - Create, enhance, and maintain technical documentation
US, TX, Austin
Amazon Leo is an initiative to launch a constellation of Low Earth Orbit satellites that will provide low-latency, high-speed broadband connectivity to unserved and underserved communities around the world. As a Systems Engineer, this role is primarily responsible for the design, development and integration of communication payload and customer terminal systems. The Role: Be part of the team defining the overall communication system and architecture of Amazon Leo’s broadband wireless network. This is a unique opportunity to innovate and define groundbreaking wireless technology at global scale. The team develops and designs the communication system for Leo and analyzes its overall system level performance such as for overall throughput, latency, system availability, packet loss etc. This role in particular will be responsible for leading the effort in designing and developing advanced technology and solutions for communication system. This role will also be responsible developing advanced physical layer + protocol stacks systems as proof of concept and reference implementation to improve the performance and reliability of the LEO network. In particular this role will be responsible for using concepts from digital signal processing, information theory, wireless communications to develop novel solutions for achieving ultra-high performance LEO network. This role will also be part of a team and develop simulation tools with particular emphasis on modeling the physical layer aspects such as advanced receiver modeling and abstraction, interference cancellation techniques, FEC abstraction models etc. This role will also play a critical role in the integration and verification of various HW and SW sub-systems as a part of system integration and link bring-up and verification. Export Control Requirement: Due to applicable export control laws and regulations, candidates must be a U.S. citizen or national, U.S. permanent resident (i.e., current Green Card holder), or lawfully admitted into the U.S. as a refugee or granted asylum.
US, MA, Boston
The Artificial General Intelligence (AGI) team is seeking a dedicated, skilled, and innovative Applied Scientist with a robust background in machine learning, statistics, quality assurance, auditing methodologies, and automated evaluation systems to ensure the highest standards of data quality, to build industry-leading technology with Large Language Models (LLMs) and multimodal systems. Key job responsibilities As part of the AGI team, an Applied Scientist will collaborate closely with core scientist team developing Amazon Nova models. They will lead the development of comprehensive quality strategies and auditing frameworks that safeguard the integrity of data collection workflows. This includes designing auditing strategies with detailed SOPs, quality metrics, and sampling methodologies that help Nova improve performances on benchmarks. The Applied Scientist will perform expert-level manual audits, conduct meta-audits to evaluate auditor performance, and provide targeted coaching to uplift overall quality capabilities. A critical aspect of this role involves developing and maintaining LLM-as-a-Judge systems, including designing judge architectures, creating evaluation rubrics, and building machine learning models for automated quality assessment. The Applied Scientist will also set up the configuration of data collection workflows and communicate quality feedback to stakeholders. An Applied Scientist will also have a direct impact on enhancing customer experiences through high-quality training and evaluation data that powers state-of-the-art LLM products and services. A day in the life An Applied Scientist with the AGI team will support quality solution design, conduct root cause analysis on data quality issues, research new auditing methodologies, and find innovative ways of optimizing data quality while setting examples for the team on quality assurance best practices and standards. Besides theoretical analysis and quality framework development, an Applied Scientist will also work closely with talented engineers, domain experts, and vendor teams to put quality strategies and automated judging systems into practice.
US, MA, Boston
The Artificial General Intelligence (AGI) team is seeking a dedicated, skilled, and innovative Applied Scientist with a robust background in machine learning, statistics, quality assurance, auditing methodologies, and automated evaluation systems to ensure the highest standards of data quality, to build industry-leading technology with Large Language Models (LLMs) and multimodal systems. Key job responsibilities As part of the AGI team, an Applied Scientist will collaborate closely with core scientist team developing Amazon Nova models. They will lead the development of comprehensive quality strategies and auditing frameworks that safeguard the integrity of data collection workflows. This includes designing auditing strategies with detailed SOPs, quality metrics, and sampling methodologies that help Nova improve performances on benchmarks. The Applied Scientist will perform expert-level manual audits, conduct meta-audits to evaluate auditor performance, and provide targeted coaching to uplift overall quality capabilities. A critical aspect of this role involves developing and maintaining LLM-as-a-Judge systems, including designing judge architectures, creating evaluation rubrics, and building machine learning models for automated quality assessment. The Applied Scientist will also set up the configuration of data collection workflows and communicate quality feedback to stakeholders. An Applied Scientist will also have a direct impact on enhancing customer experiences through high-quality training and evaluation data that powers state-of-the-art LLM products and services. A day in the life An Applied Scientist with the AGI team will support quality solution design, conduct root cause analysis on data quality issues, research new auditing methodologies, and find innovative ways of optimizing data quality while setting examples for the team on quality assurance best practices and standards. Besides theoretical analysis and quality framework development, an Applied Scientist will also work closely with talented engineers, domain experts, and vendor teams to put quality strategies and automated judging systems into practice.
US, MA, Boston
The Artificial General Intelligence (AGI) team is seeking a dedicated, skilled, and innovative Applied Scientist with a robust background in machine learning, statistics, quality assurance, auditing methodologies, and automated evaluation systems to ensure the highest standards of data quality, to build industry-leading technology with Large Language Models (LLMs) and multimodal systems. Key job responsibilities As part of the AGI team, an Applied Scientist will collaborate closely with core scientist team developing Amazon Nova models. They will lead the development of comprehensive quality strategies and auditing frameworks that safeguard the integrity of data collection workflows. This includes designing auditing strategies with detailed SOPs, quality metrics, and sampling methodologies that help Nova improve performances on benchmarks. The Applied Scientist will perform expert-level manual audits, conduct meta-audits to evaluate auditor performance, and provide targeted coaching to uplift overall quality capabilities. A critical aspect of this role involves developing and maintaining LLM-as-a-Judge systems, including designing judge architectures, creating evaluation rubrics, and building machine learning models for automated quality assessment. The Applied Scientist will also set up the configuration of data collection workflows and communicate quality feedback to stakeholders. An Applied Scientist will also have a direct impact on enhancing customer experiences through high-quality training and evaluation data that powers state-of-the-art LLM products and services. A day in the life An Applied Scientist with the AGI team will support quality solution design, conduct root cause analysis on data quality issues, research new auditing methodologies, and find innovative ways of optimizing data quality while setting examples for the team on quality assurance best practices and standards. Besides theoretical analysis and quality framework development, an Applied Scientist will also work closely with talented engineers, domain experts, and vendor teams to put quality strategies and automated judging systems into practice.
US, WA, Bellevue
We are seeking a passionate, talented, and inventive individual to join the Applied AI team and help build industry-leading technologies that customers will love. This team offers a unique opportunity to make a significant impact on the customer experience and contribute to the design, architecture, and implementation of a cutting-edge product. The mission of the Applied AI team is to enable organizations within Worldwide Amazon.com Stores to accelerate the adoption of AI technologies across various parts of our business. We are looking for a Senior Applied Scientist to join our Applied AI team to work on LLM-based solutions. On our team you will push the boundaries of ML and Generative AI techniques to scale the inputs for hundreds of billions of dollars of annual revenue for our eCommerce business. If you have a passion for AI technologies, a drive to innovate and a desire to make a meaningful impact, we invite you to become a valued member of our team. You will be responsible for developing and maintaining the systems and tools that enable us to accelerate knowledge operations and work in the intersection of Science and Engineering. You will push the boundaries of ML and Generative AI techniques to scale the inputs for hundreds of billions of dollars of annual revenue for our eCommerce business. If you have a passion for AI technologies, a drive to innovate and a desire to make a meaningful impact, we invite you to become a valued member of our team. We are seeking an experienced Scientist who combines superb technical, research, analytical and leadership capabilities with a demonstrated ability to get the right things done quickly and effectively. This person must be comfortable working with a team of top-notch developers and collaborating with our research teams. We’re looking for someone who innovates, and loves solving hard problems. You will be expected to have an established background in building highly scalable systems and system design, excellent project management skills, great communication skills, and a motivation to achieve results in a fast-paced environment. You should be somebody who enjoys working on complex problems, is customer-centric, and feels strongly about building good software as well as making that software achieve its operational goals.
IN, KA, Bengaluru
Do you want to lead the development of advanced machine learning systems that protect millions of customers and power a trusted global eCommerce experience? Are you passionate about modeling terabytes of data, solving highly ambiguous fraud and risk challenges, and driving step-change improvements through scientific innovation? If so, the Amazon Buyer Risk Prevention (BRP) Machine Learning team may be the right place for you. We are seeking a Senior Applied Scientist to define and drive the scientific direction of large-scale risk management systems that safeguard millions of transactions every day. In this role, you will lead the design and deployment of advanced machine learning solutions, influence cross-team technical strategy, and leverage emerging technologies—including Generative AI and LLMs—to build next-generation risk prevention platforms. Key job responsibilities Lead the end-to-end scientific strategy for large-scale fraud and risk modeling initiatives Define problem statements, success metrics, and long-term modeling roadmaps in partnership with business and engineering leaders Design, develop, and deploy highly scalable machine learning systems in real-time production environments Drive innovation using advanced ML, deep learning, and GenAI/LLM technologies to automate and transform risk evaluation Influence system architecture and partner with engineering teams to ensure robust, scalable implementations Establish best practices for experimentation, model validation, monitoring, and lifecycle management Mentor and raise the technical bar for junior scientists through reviews, technical guidance, and thought leadership Communicate complex scientific insights clearly to senior leadership and cross-functional stakeholders Identify emerging scientific trends and translate them into impactful production solutions
US, MA, Boston
The Artificial General Intelligence (AGI) team is seeking a dedicated, skilled, and innovative Applied Scientist with a robust background in machine learning, statistics, quality assurance, auditing methodologies, and automated evaluation systems to ensure the highest standards of data quality, to build industry-leading technology with Large Language Models (LLMs) and multimodal systems. Key job responsibilities As part of the AGI team, an Applied Scientist will collaborate closely with core scientist team developing Amazon Nova models. They will lead the development of comprehensive quality strategies and auditing frameworks that safeguard the integrity of data collection workflows. This includes designing auditing strategies with detailed SOPs, quality metrics, and sampling methodologies that help Nova improve performances on benchmarks. The Applied Scientist will perform expert-level manual audits, conduct meta-audits to evaluate auditor performance, and provide targeted coaching to uplift overall quality capabilities. A critical aspect of this role involves developing and maintaining LLM-as-a-Judge systems, including designing judge architectures, creating evaluation rubrics, and building machine learning models for automated quality assessment. The Applied Scientist will also set up the configuration of data collection workflows and communicate quality feedback to stakeholders. An Applied Scientist will also have a direct impact on enhancing customer experiences through high-quality training and evaluation data that powers state-of-the-art LLM products and services. A day in the life An Applied Scientist with the AGI team will support quality solution design, conduct root cause analysis on data quality issues, research new auditing methodologies, and find innovative ways of optimizing data quality while setting examples for the team on quality assurance best practices and standards. Besides theoretical analysis and quality framework development, an Applied Scientist will also work closely with talented engineers, domain experts, and vendor teams to put quality strategies and automated judging systems into practice.