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September 21, 202611 min readThree new papers from Amazon Bio Discovery address bottlenecks in AI-driven antibody engineering, from benchmarking binding predictors to experimentally validating de novo design.
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August 21, 20269 min read
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July 30, 20268 min read
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Featured news
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ICLR 20232023Predicting the responses of a cell under perturbations may bring important benefits to drug discovery and personalized therapeutics. In this work, we propose a novel graph variational Bayesian causal inference framework to predict a cell’s gene expressions under counterfactual perturbations (perturbations that this cell did not factually receive), leveraging information representing biological knowledge
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ICCV 20232023Graph convolutional networks (GCNs) enable end-to-end learning on graph structured data. However, many works assume a given graph structure. When the input graph is noisy or unavailable, one approach is to construct or learn a latent graph structure. These methods typically fix the choice of node degree for the entire graph, which is suboptimal. Instead, we propose a novel end-to-end differentiable graph
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AAAI/ACM 2023 Conference on AI, Ethics, and Society2023We propose a novel taxonomy for bias evaluation of discriminative foundation models, such as Contrastive Language-Pretraining (CLIP), that are used for labeling tasks. We then systematically evaluate existing methods for mitigating bias in these models with respect to our taxonomy. Specifically, we evaluate OpenAI’s CLIP and OpenCLIP models for key applications, such as zero-shot classification, image retrieval
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ICML 20232023Minimax-fair machine learning minimizes the error for the worst-off group. However, empirical evidence suggests that when sophisticated models are trained with standard empirical risk minimization (ERM), they often have the same performance on the worst-off group as a minimax-trained model. Our work makes this counterintuitive observation concrete. We prove that if the hypothesis class is sufficiently expressive
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UAI 20232023Statistical prediction models are often trained on data that is drawn from different probability distributions than their eventual use cases. One approach to proactively prepare for these shifts harnesses the intuition that causal mechanisms should remain invariant between environments. Here we focus on a challenging setting in which the causal and anticausal variables of the target are unobserved. Leaning
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